Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M5 Chr17q11-12,21_UniqueNum	BreastC_M5 Chr17q11-12,21_pVal	BreastC_M5 Chr17q11-12,21_Unique	ColonC_M2 Chr17q11-12,21-25_UniqueNum	ColonC_M2 Chr17q11-12,21-25_pVal	ColonC_M2 Chr17q11-12,21-25_Unique
AGUIRRE_PANCREATIC_CANCER_COPY_NUMBER_UP	23	AARSD1|ACLY|BECN1|CBX1|CDC27|COA3|G6PC3|GPATCH8|KPNB1|KRT10|MLX|NBR1|NKIRAS2|NMT1|NPEPPS|NSF|PNPO|PSME3|RETREG3|SMARCE1|SNX11|STAT5B|TMUB2	4.88053668845e-20	6	9.75159973513e-20	ATP6V0A1|DUSP3|EZH1|MPP2|PSMC3IP|RAB5C	15	9.47364177795e-23	ANKRD40|CASKIN2|COX11|GIPR|LRRC59|NME1|PHB|RSAD1|SLC35B1|SNF8|SPAG9|SPOP|UBE2Z|UTP18|ZNF652
AKL_HTLV1_INFECTION_UP	4	ACLY|AP2B1|CBX1|DNAJC7	0.000101426239738	0	0.000197896568568		2	4.95591090863e-06	HSD17B8|NME1
BOYAULT_LIVER_CANCER_SUBCLASS_G3_UP	9	ACACA|CASC3|KPNB1|MED1|NLE1|NPEPPS|NSF|PSMD11|PSME3	2.12228781346e-05	1	4.24457562691e-05	DUSP3	17	1.54011609537e-16	CANT1|CDC6|COIL|CSNK1D|EIF4A3|HGS|LRRC59|MMD|NME1|NOL11|PFN2|PHB|PRKAR1A|SAP30BP|SMG8|UTP18|WDR45B
CAIRO_HEPATOBLASTOMA_CLASSES_UP	16	AARSD1|AATF|ACLY|AP2B1|BLMH|CDC27|DNAJC7|KPNB1|LIG3|NLE1|RPL23|TMEM97|TUBG1|UTP6|ZNF207|ZNHIT3	0.000207415351643	1	0.000414830700173	RPL19	22	3.11338796006e-12	BIRC5|CCDC47|CDC6|CIAO1|COIL|EIF4A3|GPS1|LRRC59|MRPL12|MRPS7|NME1|NOL11|NUP85|PHB|RPS6KB1|SEPT9|SPAG5|SRSF1|SUPT4H1|TEX2|TOP2A|UTP18
Chiche(PMID: 24644022)-2014_M7.8	5	ACLY|DNAJC7|NSRP1|RUNDC1|ZNF207	0.000659964146809	1	0.000975288731667	MTA2	3	0.000344639561951	AMZ2|EIF4A3|TEPSIN
GSE7568_IL4_VS_IL4_AND_TGFB_TREATED_MACROPHAGE_24H_DN	8	AARSD1|ACACA|EFTUD2|KAT2A|PSMB3|PSME3|TADA2A|TMEM97	2.32162338308e-05	2	4.24457562691e-05	EIF1|FAM222B	6	3.98671139249e-06	FOXK2|MRPS7|NOL11|SRP68|USP36|WRB
Human Brain_Lastowska07_256genes (17533364-TableS2)	13	BRCA1|FLOT2|GOSR1|HSD17B1|KPNB1|MRPL10|RNF135|STAT3|SYNRG|TMEM97|TNFAIP1|UTP6|WIPF2	2.2779610333e-13	5	4.5559220666e-13	ACBD4|EZH1|NEK8|RFFL|SNORA21	52	3.16019679185e-71	ANAPC11|ANKRD40|ARL16|BIRC5|CCDC47|CCL15|CDC6|DCAF7|DHX40|DUS1L|EIF4A3|FOXK2|FTSJ3|GOSR2|GPS1|INTS2|JMJD6|LRRC59|MED13|MKS1|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|NAT9|NDUFAF8|NME1-NME2|NOL11|NUP85|PHB|POLG2|PPM1D|PSMC5|PTRH2|PYCR1|RAD51C|RPS6KB1|SLC25A10|SLC25A19|SLC38A10|SMG8|SRP68|SRSF1|SUMO2|SUPT4H1|TACO1|TK1|TOP2A|TSEN54|TUBD1|UTP18
Human Breast_Desmedt08_28genes_ERBB2_Module (18698033-tableS1-ERBB2)	5	CASC3|ERBB2|LASP1|PSMD3|WIPF2	2.1673829921e-07	3	6.10601633164e-10	GSDMB|PGAP3|PNMT	2	4.32865996786e-07	CUEDC1|PHB
Human Breast_Grinchuk10_11genes_KolmogorovSmirnovTestStockholm (20158880-ST-a)	4	IFT20|POLDIP2|TMEM97|TNFAIP1	2.14808773018e-06	0	1.08757732215e-06		0	3.20859813821e-06	
Human Breast_Grinchuk10_11genes_KolmogorovSmirnovTestUppsala (20158880-ST-b)	4	IFT20|POLDIP2|TMEM97|TNFAIP1	2.14808773018e-06	0	1.08757732215e-06		0	3.20859813821e-06	
Human Breast_Grinchuk10_17genes_KolmogorovSmirnovTestStockholm (20158880-ST-c)	4	ERBB2|FBXL20|MED1|MIEN1	3.01304743599e-05	7	3.97770337806e-19	GRB7|GSDMB|PGAP3|PNMT|PPP1R1B|RPL19|TCAP	0	6.02609487197e-05	
Human Breast_Grinchuk10_17genes_KolmogorovSmirnovTestUppsala (20158880-ST-d)	4	ERBB2|FBXL20|MED1|MIEN1	3.01304743599e-05	7	3.97770337806e-19	GRB7|GSDMB|PGAP3|PNMT|PPP1R1B|RPL19|TCAP	0	6.02609487197e-05	
Human Breast_Hodgson05_12genes (16266989-Table2)	3	ERBB2|MIEN1|STARD3	0.000405625518504	6	5.55032937523e-16	GRB7|ORMDL3|PGAP3|PNMT|PPP1R1B|TCAP	0	0.000811251037008	
Human Breast_Loi09_19genes_GROWTHFACTORSIGNALING (19552798-S1)	1	ERBB2	0.000364751973334	2	0.000723295788196	GRB7|TCAP	4	6.20815847225e-06	CDC6|CYB561|PSMC5|WDR66
Human Breast_Orsetti04_32genes (15374954-Table2)	6	ACLY|NMT1|SMARCE1|STAT3|STAT5B|TUBG1	5.17597366576e-11	2	1.01118464909e-10	TUBG2|UBTF	4	2.40100840621e-12	JUP|NME1|TOM1L1|TOP2A
Human Breast_Orsetti04_39genes (15374954-Table1)	2	ERBB2|LASP1	7.1588838469e-05	2	0.000143177676938	GRB7|RPL19	11	1.24816318975e-17	BIRC5|COX11|GOSR2|GRB2|PRKAR1A|RAD51C|RPS6KB1|SMARCD2|SRP68|SYNGR2|TOM1L1
Human Breast_Wirapati08_20genes_ERBB2_Module (18662380-S3-ERBB2)	8	ERBB2|LASP1|MED1|MIEN1|PCGF2|PSMB3|PSMD3|STARD3	1.63069160109e-10	7	3.0636882012e-27	CDK12|GRB7|GSDMB|ORMDL3|PGAP3|PNMT|TCAP	0	3.26138320219e-10	
Human Lung_not_cancer_Golpon04_242genes (15284076-TableE2)	8	BECN1|COASY|DNAJC7|NMT1|PSMB3|RPL23|TMEM97|TUBG1	0.000354821570289	1	0.000492615501162	THRA	4	0.000217027639416	MRPL58|PSMC5|SLC25A10|SMARCD2
Human Ovarian_Presneau03_37genes (12629520-Table2)	4	BECN1|BLMH|NMT1|NPEPPS	6.80338738655e-07	1	1.36035133899e-06	STAT5A	4	3.26138320219e-10	CDC6|COX11|NME1|PHB
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_UP	14	BRCA1|FLOT2|GOSR1|HSD17B1|KPNB1|MRPL10|RNF135|RPL23|STAT3|SYNRG|TMEM97|TNFAIP1|UTP6|WIPF2	2.53182746411e-13	4	5.06365492822e-13	ACBD4|EZH1|NEK8|RFFL	53	8.97709690722e-75	ANAPC11|ANKRD40|ARL16|BIRC5|CCDC47|CDC6|DCAF7|DHX40|DUS1L|EIF4A3|FOXK2|FTSJ3|GOSR2|GPS1|INTS2|JMJD6|LRRC59|MCRIP1|MED13|MKS1|MRPL12|MRPL27|MRPL38|MRPL58|MRPS7|MRPS23|NAT9|NDUFAF8|NME1|NOL11|NUP85|PHB|POLG2|PPM1D|PSMC5|PTRH2|PYCR1|RAD51C|RPS6KB1|SLC25A10|SLC25A19|SLC38A10|SMG8|SRP68|SRSF1|SUMO2|SUPT4H1|TACO1|TK1|TOP2A|TSEN54|TUBD1|UTP18
MARTENS_TRETINOIN_RESPONSE_DN	14	COASY|ERAL1|IFT20|KRT10|LINC02210|MLX|MRM1|NF1|NLE1|PEX12|PSME3|RPL23|TLCD1|TMUB2	0.000124323520668	6	0.000248031727539	EIF1|PROCA1|RPL19|RPL23A|TMEM102|TMEM129	19	6.15313796517e-07	BIRC5|CSNK1D|DCXR|HNRNPDL|HSD17B8|METTL23|MIF4GD|MRPL12|MRPS7|NME1-NME2|NT5C|OXLD1|PIGW|SRSF1|SRSF7|STRADA|SUPT4H1|SYNGR2|TEFM
MIDORIKAWA_AMPLIFIED_IN_LIVER_CANCER	14	ACACA|DDX52|DUSP14|FBXL20|LASP1|MLLT6|MRPL45|PCGF2|PIP4K2B|PSMB3|RPL23|SOCS7|SYNRG|TADA2A	3.04539733487e-14	3	5.55897569414e-22	CWC25|RPL19|SRCIN1	0	6.09079461416e-14	
MYLLYKANGAS_AMPLIFICATION_HOT_SPOT_12	6	BRCA1|ERBB2|LASP1|MLLT6|NF1|SUZ12	5.14502091825e-10	0	8.7278363868e-10		1	1.5622054497e-10	ASPSCR1
NIKOLSKY_BREAST_CANCER_17Q11_Q21_AMPLICON	40	ABHD15|ACACA|BLMH|CASC3|DDX52|DHRS13|DUSP14|ERAL1|ERBB2|FBXL20|FLOT2|GOSR1|KIAA0100|KRT10|LASP1|MED1|MIEN1|MLLT6|MRPL45|NSRP1|NUFIP2|PCGF2|PHF12|PIP4K2B|PSMB3|PSMD3|RAPGEFL1|RPL23|SDF2|SMARCE1|SOCS7|STARD3|SUPT6H|SYNRG|TADA2A|TLCD1|TMEM99|TP53I13|TRAF4|WIPF2	4.43161003767e-51	24	1.10819254628e-98	CDK12|CPD|CWC25|FAM222B|GRB7|GSDMB|MSL1|MYO18A|NEK8|ORMDL3|PGAP3|PIGS|PNMT|PPP1R1B|PROCA1|RPL19|RPL23A|SGK494|SLC6A4|SRCIN1|SSH2|TCAP|THRA|UNC119	6	8.86322007534e-51	ANKRD13B|CDC6|MYO1D|SLC46A1|SPAG5|TOP2A
SMID_BREAST_CANCER_ERBB2_UP	8	ERBB2|KIAA0100|MED1|PSMD3|STARD3|SUPT6H|TRAF4|WIPF2	9.1739655157e-05	6	6.24202090088e-10	CDK12|CPD|GRB7|GSDMB|PGAP3|PNMT	2	0.000183478686112	CYB561|FASN
SP1_Q6_01	9	KAT2A|LASP1|NLK|NUFIP2|PCGF2|PIP4K2B|SMARCE1|SYNRG|TMUB2	3.87541164302e-05	2	7.67071725591e-05	CPD|PLEKHM1	8	8.01060301371e-07	CSNK1D|GRB2|KLF5|MYO19|PCYT2|PIGW|SLC46A1|UBALD2
cellular ketone metabolic process [GoID:GO:0042180; evidenceTypes:IBA|IC|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	8	BRCA1|NMT1|PSMB3|PSMD3|PSMD11|PSME3|STARD3|STAT5B	0.000763225433976	1	0.000939060521869	IRS2	4	0.000587390346082	AFMID|FSHB|PSMC5|PSMD12
chr17q11	38	AATF|ABHD15|AP2B1|BLMH|C17ORF75|CASC3|DHRS13|DNAJC7|ERAL1|ERBB2|FLOT2|GOSR1|HSD17B1|IFT20|KIAA0100|LASP1|LIG3|LRRC37B|NAGLU|NF1|NLK|NSRP1|NUFIP2|PHF12|POLDIP2|RAB11FIP4|RDM1|RHOT1|RNF135|SDF2|STARD3|STAT5B|SUPT6H|TLCD1|TMEM97|TP53I13|TRAF4|UTP6	7.19219899185e-55	13	1.63360921219e-74	FAM222B|GRB7|MYO18A|NEK8|PROCA1|RAD51D|RPL23A|SGK494|SLC6A4|SSH2|STAT5A|THRA|UNC119	8	1.43843979837e-54	ANKRD13B|ATAD5|CCL15|LYRM9|MYO1D|SLC46A1|SPAG5|TEFM
chr17q12	21	CDC27|CISD3|COASY|DHRS11|DUSP14|KAT2A|LOC440434|MED1|MIEN1|MRM1|NLE1|NPEPPS|PCGF2|PSMB3|PSMD11|PSME3|RPL23|SLC25A39|SYNRG|TADA2A|ZNF830	8.1499308709e-19	9	2.82192365816e-40	CDK12|CWC25|MPP2|ORMDL3|PPP1R1B|RFFL|SNORA21|SRCIN1|TCAP	0	1.62998617418e-18	
chr17q21	50	AARSD1|ACACA|ACLY|BECN1|BRCA1|CBX1|CCDC43|COA3|DDX52|DHX8|EFTUD2|FBXL20|G6PC3|GGNBP2|GHDC|GPATCH8|KANSL1|KPNB1|KRT10|LINC02210|MLLT6|MLX|MRPL10|MRPL45|NBR1|NBR2|NFE2L1|NKIRAS2|NMT1|NSF|NT5C3B|PEX12|PIP4K2B|PNPO|PSMD3|RAPGEFL1|RETREG3|RUNDC1|SMARCE1|SNX11|SOCS7|STAT3|SUZ12|TMEM99|TMEM101|TMUB2|TUBG1|VPS25|WIPF2|ZNHIT3	3.26632766431e-79	24	2.87574801799e-89	ACBD4|ATP6V0A1|DCAKD|DUSP3|EIF1|EZH1|GSDMB|HDAC5|LSM12|MSL1|NAGS|OSBPL7|PGAP3|PLEKHH3|PLEKHM1|PNMT|PSMC3IP|PYY|RAB5C|SCRN2|SP2|TUBG2|UBTF|VAT1	29	6.53265532833e-79	ANKRD40|APPBP2|ATXN7L3|CDC6|DBF4B|FLJ45513|GOSR2|JUP|LRRC59|MKS1|MRPL27|MYO19|NME1|NME1-NME2|PHB|PIGW|PRR15L|RSAD1|SLC35B1|SLC39A11|SNF8|SPAG9|SPOP|SRSF1|SUPT4H1|TOP2A|UBE2Z|UTP18|ZNF652
negative regulation of G2_M transition of mitotic cell cycle [GoID:GO:0010972; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|TAS]	6	BRCA1|PSMB3|PSMD3|PSMD11|PSME3|ZNF830	0.000312208343583	0	0.00049596843805		2	0.000128448249117	PSMC5|PSMD12
negative regulation of cell cycle G2_M phase transition [GoID:GO:1902750; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|TAS]	6	BRCA1|PSMB3|PSMD3|PSMD11|PSME3|ZNF830	0.000648320749511	0	0.000975288731667		2	0.000321352767354	PSMC5|PSMD12
negative regulation of cell cycle process [GoID:GO:0010948; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|NAS|TAS]	10	BRCA1|PCGF2|PSMB3|PSMD3|PSMD11|PSME3|RPL23|SUZ12|ZNF207|ZNF830	0.000610944948111	1	0.000830988946456	JADE1	5	0.000390900949766	PRKAR1A|PSMC5|PSMD12|TOM1L1|TRIM37
negative regulation of protein modification process [GoID:GO:0031400; evidenceTypes:IBA|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	13	BRCA1|CDC27|DUSP14|GGNBP2|NF1|PSMB3|PSMD3|PSMD11|PSME3|RPL23|SOCS7|SUPT6H|VPS25	0.000360564192336	5	0.000105404125984	BDKRB1|BDKRB2|DUSP3|PPP1R1B|SRCIN1	9	0.000615724258687	ANAPC11|GPS1|IGF1R|PHB|PRKAR1A|PSMC5|PSMD12|RPTOR|SLC9A3R1
negative regulation of transferase activity [GoID:GO:0051348; evidenceTypes:IBA|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	11	CDC27|DUSP14|GGNBP2|NF1|PSMB3|PSMD3|PSMD11|PSME3|RPL23|SOCS7|VPS25	8.46739025902e-06	4	7.85856697156e-06	DUSP3|IRS2|PPP1R1B|SRCIN1	8	9.07621354647e-06	ANAPC11|COX11|GPS1|IGF1R|PRKAR1A|PSMC5|PSMD12|RPTOR
negative regulation of ubiquitin protein ligase activity [GoID:GO:1904667; evidenceTypes:IBA|IDA|IMP|TAS]	6	CDC27|PSMB3|PSMD3|PSMD11|PSME3|RPL23	9.11186931578e-05	0	0.000179283035232		3	2.95435108357e-06	ANAPC11|PSMC5|PSMD12
negative regulation of ubiquitin-protein transferase activity [GoID:GO:0051444; evidenceTypes:IBA|IDA|IEA|IMP|ISS|TAS]	6	CDC27|PSMB3|PSMD3|PSMD11|PSME3|RPL23	0.000151573441443	0	0.000296389668241		3	6.75721464496e-06	ANAPC11|PSMC5|PSMD12
protein modification by small protein conjugation [GoID:GO:0032446; evidenceTypes:EXP|IBA|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	17	BLMH|BRCA1|CDC27|FBXL20|MED1|NPEPPS|PCGF2|PEX12|PSMB3|PSMD3|PSMD11|PSME3|RNF135|RPL23|SOCS7|SUZ12|TNFAIP1	0.000604253647046	4	0.000996403091815	MARCH9|RFFL|TMEM129|TRIM7	14	0.000212104202278	ANAPC11|BIRC5|CENPX|DCAF7|NUP85|PSMC5|PSMD12|RMND5B|RNFT1|SPOP|SUMO2|TOP2A|TRIM37|UBE2Z
protein ubiquitination [GoID:GO:0016567; evidenceTypes:EXP|IBA|IDA|IEA|IGI|IMP|IPI|ISS|NAS|TAS]	17	BLMH|BRCA1|CDC27|FBXL20|MED1|NPEPPS|PCGF2|PEX12|PSMB3|PSMD3|PSMD11|PSME3|RNF135|RPL23|SOCS7|SUZ12|TNFAIP1	0.00036698526561	4	0.000282980076404	MARCH9|RFFL|TMEM129|TRIM7	11	0.000450990454815	ANAPC11|BIRC5|CENPX|DCAF7|PSMC5|PSMD12|RMND5B|RNFT1|SPOP|TRIM37|UBE2Z
regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process [GoID:GO:2000058; evidenceTypes:IDA|IEA|IMP|ISS|NAS|TAS]	6	CDC27|PSMB3|PSMD3|PSMD11|PSME3|RPL23	0.000460058025841	0	0.000877431340636		3	4.26847110455e-05	ANAPC11|PSMC5|PSMD12
regulation of ubiquitin protein ligase activity [GoID:GO:1904666; evidenceTypes:IBA|IDA|IEA|IMP|TAS]	6	CDC27|PSMB3|PSMD3|PSMD11|PSME3|RPL23	0.000225598453463	0	0.000438403100476		3	1.27938064503e-05	ANAPC11|PSMC5|PSMD12
steroid biosynthetic process [GoID:GO:0006694; evidenceTypes:IBA|IC|IDA|IEA|IMP|ISS|NAS|TAS]	7	ACACA|ACLY|DHRS11|HSD17B1|KPNB1|MED1|STARD3	0.000641488615573	1	0.000915115995606	OSBPL7	4	0.000367861235539	FASN|FSHB|HSD17B8|TSPOAP1
